fast::TissueSegmentation Class Reference

#include <TissueSegmentation.hpp>

Inheritance diagram for fast::TissueSegmentation:

Collaboration diagram for fast::TissueSegmentation:

Public Member Functions
void	setThreshold (int thresh)
int	getThreshold () const
void	setDilate (int radius)
int	getDilate () const
void	setErode (int radius)
int	getErode () const
Public Member Functions inherited from fast::SegmentationAlgorithm
virtual void	setLabel (Segmentation::LabelType label)
virtual Segmentation::LabelType	getLabel () const
Public Member Functions inherited from fast::ProcessObject
virtual	~ProcessObject ()
void	update (int executeToken=-1)
RuntimeMeasurement::pointer	getRuntime ()
RuntimeMeasurement::pointer	getRuntime (std::string name)
RuntimeMeasurementsManager::pointer	getAllRuntimes ()
void	enableRuntimeMeasurements ()
void	disableRuntimeMeasurements ()
void	setMainDevice (ExecutionDevice::pointer device)
void	setMainDeviceCriteria (const DeviceCriteria &citeria)
ExecutionDevice::pointer	getMainDevice () const
void	setDevice (uint deviceNumber, ExecutionDevice::pointer device)
void	setDeviceCriteria (uint deviceNumber, const DeviceCriteria &criteria)
ExecutionDevice::pointer	getDevice (uint deviceNumber) const
virtual DataChannel::pointer	getOutputPort (uint portID=0)
virtual DataChannel::pointer	getInputPort (uint portID=0)
virtual void	setInputConnection (DataChannel::pointer port)
virtual void	setInputConnection (uint portID, DataChannel::pointer port)
virtual void	setInputData (DataObject::pointer data)
virtual void	setInputData (uint portID, DataObject::pointer data)
int	getNrOfInputConnections () const
int	getNrOfOutputPorts () const
virtual std::string	getNameOfClass () const =0
virtual void	loadAttributes ()
std::shared_ptr< Attribute >	getAttribute (std::string id)
std::unordered_map< std::string, std::shared_ptr< Attribute > >	getAttributes ()
void	setAttributes (std::vector< std::shared_ptr< Attribute >> attributes)
void	stopPipeline ()
void	setModified (bool modified)
template<class DataType >
std::shared_ptr< DataType >	updateAndGetOutputData (uint portID=0)
Public Member Functions inherited from fast::Object
	Object ()
virtual	~Object ()
Reporter &	getReporter ()

Protected Member Functions
void	execute ()
	TissueSegmentation ()
Protected Member Functions inherited from fast::SegmentationAlgorithm
	SegmentationAlgorithm ()
Protected Member Functions inherited from fast::ProcessObject
	ProcessObject ()
virtual void	preExecute ()
virtual void	postExecute ()
template<class DataType >
void	createInputPort (uint portID, bool required=true)
template<class DataType >
void	createOutputPort (uint portID)
template<class DataType >
std::shared_ptr< DataType >	getInputData (uint portID=0)
template<class DataType >
std::shared_ptr< DataType >	getOutputData (uint portID=0)
void	addOutputData (uint portID, DataObject::pointer data)
bool	hasNewInputData (uint portID)
virtual void	waitToFinish ()
void	createOpenCLProgram (std::string sourceFilename, std::string name="")
cl::Program	getOpenCLProgram (std::shared_ptr< OpenCLDevice > device, std::string name="", std::string buildOptions="")
void	createFloatAttribute (std::string id, std::string name, std::string description, float initialValue)
void	createIntegerAttribute (std::string id, std::string name, std::string description, int initialValue)
void	createBooleanAttribute (std::string id, std::string name, std::string description, bool initialValue)
void	createStringAttribute (std::string id, std::string name, std::string description, std::string initialValue)
float	getFloatAttribute (std::string id)
int	getIntegerAttribute (std::string id)
bool	getBooleanAttribute (std::string id)
std::string	getStringAttribute (std::string id)
std::vector< float >	getFloatListAttribute (std::string id)
std::vector< int >	getIntegerListAttribute (std::string id)
std::vector< bool >	getBooleanListAttribute (std::string id)
std::vector< std::string >	getStringListAttribute (std::string id)
void	changeDeviceOnInputs (uint deviceNumber, ExecutionDevice::pointer device)
void	validateInputPortExists (uint portID)
void	validateOutputPortExists (uint portID)
Protected Member Functions inherited from fast::Object
Reporter &	reportError ()
Reporter &	reportWarning ()
Reporter &	reportInfo ()
ReporterEnd	reportEnd () const

Additional Inherited Members
Public Types inherited from fast::ProcessObject
typedef std::shared_ptr< ProcessObject >	pointer
Public Types inherited from fast::Object
typedef std::shared_ptr< Object >	pointer
Static Public Member Functions inherited from fast::ProcessObject
static std::string	getStaticNameOfClass ()
Static Public Member Functions inherited from fast::Object
static std::string	getStaticNameOfClass ()
Protected Attributes inherited from fast::SegmentationAlgorithm
Segmentation::LabelType	mLabel
Protected Attributes inherited from fast::ProcessObject
bool	mIsModified
int	m_lastExecuteToken = -1
RuntimeMeasurementsManager::pointer	mRuntimeManager
std::unordered_map< uint, bool >	mRequiredInputs
std::unordered_map< uint, std::vector< uint > >	mInputDevices
std::unordered_map< uint, ExecutionDevice::pointer >	mDevices
std::unordered_map< uint, DeviceCriteria >	mDeviceCriteria
std::unordered_map< uint, DataChannel::pointer >	mInputConnections
std::unordered_map< uint, std::vector< std::weak_ptr< DataChannel > > >	mOutputConnections
std::unordered_map< uint, bool >	mInputPorts
std::unordered_set< uint >	mOutputPorts
std::unordered_map< uint, std::pair< DataObject::pointer, uint64_t > >	mLastProcessed
std::unordered_map< std::string, std::shared_ptr< OpenCLProgram > >	mOpenCLPrograms
std::unordered_map< std::string, std::shared_ptr< Attribute > >	mAttributes
std::unordered_map< std::string, std::string >	m_frameData
std::unordered_set< std::string >	m_lastFrame
int	m_maximumNrOfFrames = -1
Protected Attributes inherited from fast::Object
std::weak_ptr< Object >	mPtr

Constructor & Destructor Documentation

TissueSegmentation()

fast::TissueSegmentation::TissueSegmentation ( )

protected

Member Function Documentation

execute()

void fast::TissueSegmentation::execute ( )

protectedvirtual

Implements fast::ProcessObject.

getDilate()

int fast::TissueSegmentation::getDilate

(

)

const

Get current dilation value

getErode()

int fast::TissueSegmentation::getErode

(

)

const

Get current erosion value

getThreshold()

int fast::TissueSegmentation::getThreshold

(

)

const

Get current threshold value

setDilate()

void fast::TissueSegmentation::setDilate

(

int

radius

)

Set radius for disk used in morphological dilation. Default is 9

Parameters

radius

setErode()

void fast::TissueSegmentation::setErode

(

int

radius

)

Set radius for disk used in morphological erosion. Default is 9

Parameters

radius

setThreshold()

void fast::TissueSegmentation::setThreshold

(

int

thresh

)

Set single threshold for pixel filtering based on the distance a RGB-triplet is from the color white. Default is 85

Parameters

thresh

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The documentation for this class was generated from the following file:

• Algorithms/TissueSegmentation/TissueSegmentation.hpp